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A probabilistic framework for behavioral identification from animal-borne accelerometers

Jane E. Dentinger, Luca Borger Orcid Logo, Mark Holton Orcid Logo, Ruholla Jafari-Marandi, Durham A. Norman, Brian K. Smith, Seth F. Oppenheimer, Bronson K. Strickland, Rory Wilson Orcid Logo, Garrett M. Street

Ecological Modelling, Volume: 464, Start page: 109818

Swansea University Authors: Luca Borger Orcid Logo, Mark Holton Orcid Logo, Rory Wilson Orcid Logo

  • Accepted Manuscript under embargo until: 14th November 2022

Abstract

Many studies of animal distributions use habitat and climactic variables to explain patterns of observed space use. However, without behavioral information, we can only speculate as to why and how these characteristics are important to species persistence. Animal-borne accelerometer and magnetometer...

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Published in: Ecological Modelling
ISSN: 0304-3800
Published: Elsevier BV 2022
Online Access: Check full text

URI: https://cronfa.swan.ac.uk/Record/cronfa58741
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Abstract: Many studies of animal distributions use habitat and climactic variables to explain patterns of observed space use. However, without behavioral information, we can only speculate as to why and how these characteristics are important to species persistence. Animal-borne accelerometer and magnetometer data loggers can be used to detect behaviors and when coupled with telemetry improve our understanding of animal space use and habitat requirements. However, these loggers collect tremendous quantities of data requiring automated machine learning techniques to identify patterns in the data. Supervised machine learning requires a set of training signals with known behaviors to train the model to identify the unique signal characteristics associated with each behavior. In contrast, unsupervised approaches aggregate unlabeled signals into groups based purely on signal similarity but, without additional information, do not identify specific behaviors. In this paper, we propose a probabilistic framework for interpreting uncertainty in machine learning techniques—the probability profile—and demonstrate how to post hoc identify behaviors within signal groups. We assess model performance using a matrix-based measure of dissimilarity. We used a Random Forest (RF) and a clustered self-organizing map (CSOM) for comparison and demonstrate the use of a behavioral profile for each using a data set of high-frequency accelerometer and magnetometer data collected from 7 captive wild pigs (Sus scrofa) moving in a 1 ha outdoor enclosure. We found that the RF had more discrimination than the CSOM which had fewer clusters associated with high probabilities of a single behavior (>50%). The leave-p-out cross validation statistic of the probability matrix ( L 1 ¯ ) indicated that there was an average maximum dissimilarity of 20% and 65% between the training and test data sets for the RF and CSOM methods, respectively. Using a probability profile to describe groups predicted from machine learning allows the variation and error inherent in behavioral prediction to be incorporated directly into the model to better reflect the nuances of behavior derived from accelerometer and/or magnetometer signals. We discuss the data requirements of this framework, demonstrate its application to field data, highlight critical assumptions and caveats, and examine how it may be used to generate new ecological inference.
Keywords: Accelerometers; Behavior; Machine learning; k-means clustering; SOM; Random forest
College: College of Science
Funders: Mississippi Agriculture and Forestry Research Station Strategic Research Initiative Noble Research Institute
Start Page: 109818