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Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism

Astrid Gärdes, Eva C. Sonnenschein Orcid Logo, Aamir Shehzad, Shalin Seebah, Hanno Teeling, Pablo Yarza, Frank Oliver Glöckner, Hans-Peter Grossart, Matthias S. Ullrich

Standards in Genomic Sciences, Volume: 3, Issue: 2, Pages: 97 - 107

Swansea University Author: Eva C. Sonnenschein Orcid Logo

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DOI (Published version): 10.4056/sigs.922139

Abstract

Marinobacter adhaerens HP15 is the type strain of a newly identified marine species, which is phylogenetically related to M. flavimaris, M. algicola, and M. aquaeolei. It is of special interest for research on marine aggregate formation because it showed specific attachment to diatom cells. In vitro...

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Published in: Standards in Genomic Sciences
ISSN: 1944-3277
Published: Springer Science and Business Media LLC 2010
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URI: https://cronfa.swan.ac.uk/Record/cronfa61745
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spelling 2022-11-04T12:45:50.3245401 v2 61745 2022-10-31 Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism f6a4027578a15ea3e6453a54b849c686 0000-0001-6959-5100 Eva C. Sonnenschein Eva C. Sonnenschein true false 2022-10-31 SBI Marinobacter adhaerens HP15 is the type strain of a newly identified marine species, which is phylogenetically related to M. flavimaris, M. algicola, and M. aquaeolei. It is of special interest for research on marine aggregate formation because it showed specific attachment to diatom cells. In vitro it led to exopolymer formation and aggregation of these algal cells to form marine snow particles. M. adhaerens HP15 is a free-living, motile, rod-shaped, Gram-negative gammaproteobacterium, which was originally isolated from marine particles sampled in the German Wadden Sea. M. adhaerens HP15 grows heterotrophically on various media, is easy to access genetically, and serves as a model organism to investigate the cellular and molecular interactions with the diatom Thalassiosira weissflogii. Here we describe the complete and annotated genome sequence of M. adhaerens HP15 as well as some details on flagella-associated genes. M. adhaerens HP15 possesses three replicons; the chromosome comprises 4,422,725 bp and codes for 4,180 protein-coding genes, 51 tRNAs and three rRNA operons, while the two circular plasmids are ~187 kb and ~42 kb in size and contain 178 and 52 protein-coding genes, respectively. Journal Article Standards in Genomic Sciences 3 2 97 107 Springer Science and Business Media LLC 1944-3277 marine heterotrophic bacteria; diatoms; attachment; marine aggregate formation 31 10 2010 2010-10-31 10.4056/sigs.922139 COLLEGE NANME Biosciences COLLEGE CODE SBI Swansea University 2022-11-04T12:45:50.3245401 2022-10-31T15:24:57.2765639 Faculty of Science and Engineering School of Biosciences, Geography and Physics - Biosciences Astrid Gärdes 1 Eva C. Sonnenschein 0000-0001-6959-5100 2 Aamir Shehzad 3 Shalin Seebah 4 Hanno Teeling 5 Pablo Yarza 6 Frank Oliver Glöckner 7 Hans-Peter Grossart 8 Matthias S. Ullrich 9 61745__25648__2f7d6558279241d6a812c2f83e78b7a1.pdf 61745_VoR.pdf 2022-11-04T12:44:22.9150298 Output 2561388 application/pdf Version of Record true © Gaerdes et al. 2010. This is an open-access article distributed under the terms of the Creative Commons Attribution License true eng http://creativecommons.org/licenses/by/2.5/
title Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism
spellingShingle Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism
Eva C. Sonnenschein
title_short Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism
title_full Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism
title_fullStr Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism
title_full_unstemmed Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism
title_sort Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism
author_id_str_mv f6a4027578a15ea3e6453a54b849c686
author_id_fullname_str_mv f6a4027578a15ea3e6453a54b849c686_***_Eva C. Sonnenschein
author Eva C. Sonnenschein
author2 Astrid Gärdes
Eva C. Sonnenschein
Aamir Shehzad
Shalin Seebah
Hanno Teeling
Pablo Yarza
Frank Oliver Glöckner
Hans-Peter Grossart
Matthias S. Ullrich
format Journal article
container_title Standards in Genomic Sciences
container_volume 3
container_issue 2
container_start_page 97
publishDate 2010
institution Swansea University
issn 1944-3277
doi_str_mv 10.4056/sigs.922139
publisher Springer Science and Business Media LLC
college_str Faculty of Science and Engineering
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hierarchy_top_id facultyofscienceandengineering
hierarchy_top_title Faculty of Science and Engineering
hierarchy_parent_id facultyofscienceandengineering
hierarchy_parent_title Faculty of Science and Engineering
department_str School of Biosciences, Geography and Physics - Biosciences{{{_:::_}}}Faculty of Science and Engineering{{{_:::_}}}School of Biosciences, Geography and Physics - Biosciences
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description Marinobacter adhaerens HP15 is the type strain of a newly identified marine species, which is phylogenetically related to M. flavimaris, M. algicola, and M. aquaeolei. It is of special interest for research on marine aggregate formation because it showed specific attachment to diatom cells. In vitro it led to exopolymer formation and aggregation of these algal cells to form marine snow particles. M. adhaerens HP15 is a free-living, motile, rod-shaped, Gram-negative gammaproteobacterium, which was originally isolated from marine particles sampled in the German Wadden Sea. M. adhaerens HP15 grows heterotrophically on various media, is easy to access genetically, and serves as a model organism to investigate the cellular and molecular interactions with the diatom Thalassiosira weissflogii. Here we describe the complete and annotated genome sequence of M. adhaerens HP15 as well as some details on flagella-associated genes. M. adhaerens HP15 possesses three replicons; the chromosome comprises 4,422,725 bp and codes for 4,180 protein-coding genes, 51 tRNAs and three rRNA operons, while the two circular plasmids are ~187 kb and ~42 kb in size and contain 178 and 52 protein-coding genes, respectively.
published_date 2010-10-31T04:20:48Z
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