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Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research

Ahmet Erdemir, Peter J. Hunter, Gerhard A. Holzapfel, Leslie M. Loew, John Middleton, Christopher R. Jacobs, Perumal Nithiarasu Orcid Logo, Rainlad Löhner, Guowei Wei, Beth A. Winkelstein, Victor H. Barocas, Farshid Guilak, Joy P. Ku, Jennifer L. Hicks, Scott L. Delp, Michael S. Sacks, Jeffrey A. Weiss, Gerard A. Ateshian, Steve A. Maas, Andrew D. McCulloch, Grace C. Y. Peng

Journal of Biomechanical Engineering, Volume: 140, Issue: 2, Start page: 024701

Swansea University Author: Perumal Nithiarasu Orcid Logo

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DOI (Published version): 10.1115/1.4038768

Abstract

The role of computational modeling for biomechanics will be increasingly prominent. In computational biomechanics, model sharing can facilitate assessment of reproducibility, and can provide an opportunity for repurposing and reuse, and a venue for medical training. The community's desire to in...

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Published in: Journal of Biomechanical Engineering
ISSN: 0148-0731
Published: 2018
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URI: https://cronfa.swan.ac.uk/Record/cronfa37785
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The community's desire to investigate biological and biomechanical phenomena crossing multiple systems, scales, and physical domains, also motivates sharing of modeling resources as blending of models developed by domain experts is anticipated. The goal of this article is to understand current perspectives in the biomechanics community for the sharing of computational models and related resources. Opinions on opportunities, challenges, and pathways to model sharing, particularly as part of the scholarly publishing workflow, were sought. A synthesis of these opinion pieces indicates that the community recognizes the necessity and usefulness of model sharing. There is a strong will to facilitate model sharing and there are corresponding initiatives by the scientific journals. Outside the publishing enterprise, infrastructure to facilitate model sharing in biomechanics exists and simulation software developers are interested in accommodating the community's needs for sharing of modeling resources. Encouragement for the use of standardized markups, concerns related to quality assurance, acknowledgement of increased burden, and importance of stewardship of resources are noted. In the short-term, it is advisable that the community builds upon recent strategies and experiments with new pathways for continued demonstration of model sharing, its promotion, and its utility. 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spelling 2018-02-27T14:38:06.0506698 v2 37785 2018-01-02 Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research 3b28bf59358fc2b9bd9a46897dbfc92d 0000-0002-4901-2980 Perumal Nithiarasu Perumal Nithiarasu true false 2018-01-02 CIVL The role of computational modeling for biomechanics will be increasingly prominent. In computational biomechanics, model sharing can facilitate assessment of reproducibility, and can provide an opportunity for repurposing and reuse, and a venue for medical training. The community's desire to investigate biological and biomechanical phenomena crossing multiple systems, scales, and physical domains, also motivates sharing of modeling resources as blending of models developed by domain experts is anticipated. The goal of this article is to understand current perspectives in the biomechanics community for the sharing of computational models and related resources. Opinions on opportunities, challenges, and pathways to model sharing, particularly as part of the scholarly publishing workflow, were sought. A synthesis of these opinion pieces indicates that the community recognizes the necessity and usefulness of model sharing. There is a strong will to facilitate model sharing and there are corresponding initiatives by the scientific journals. Outside the publishing enterprise, infrastructure to facilitate model sharing in biomechanics exists and simulation software developers are interested in accommodating the community's needs for sharing of modeling resources. Encouragement for the use of standardized markups, concerns related to quality assurance, acknowledgement of increased burden, and importance of stewardship of resources are noted. In the short-term, it is advisable that the community builds upon recent strategies and experiments with new pathways for continued demonstration of model sharing, its promotion, and its utility. Nonetheless, the need for a long term strategy to unify approaches in sharing computational models and related resources is acknowledged. Journal Article Journal of Biomechanical Engineering 140 2 024701 0148-0731 Biomechanics , Modeling , Computer software , Workflow , Biomedicine , Quality control , Computer simulation , Simulation 1 2 2018 2018-02-01 10.1115/1.4038768 COLLEGE NANME Civil Engineering COLLEGE CODE CIVL Swansea University 2018-02-27T14:38:06.0506698 2018-01-02T11:55:13.6781995 Faculty of Science and Engineering School of Aerospace, Civil, Electrical, General and Mechanical Engineering - Civil Engineering Ahmet Erdemir 1 Peter J. Hunter 2 Gerhard A. Holzapfel 3 Leslie M. Loew 4 John Middleton 5 Christopher R. Jacobs 6 Perumal Nithiarasu 0000-0002-4901-2980 7 Rainlad Löhner 8 Guowei Wei 9 Beth A. Winkelstein 10 Victor H. Barocas 11 Farshid Guilak 12 Joy P. Ku 13 Jennifer L. Hicks 14 Scott L. Delp 15 Michael S. Sacks 16 Jeffrey A. Weiss 17 Gerard A. Ateshian 18 Steve A. Maas 19 Andrew D. McCulloch 20 Grace C. Y. Peng 21 0037785-02012018115740.pdf erdemir2017.pdf 2018-01-02T11:57:40.2430000 Output 345632 application/pdf Accepted Manuscript true 2018-12-16T00:00:00.0000000 true eng
title Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research
spellingShingle Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research
Perumal Nithiarasu
title_short Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research
title_full Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research
title_fullStr Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research
title_full_unstemmed Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research
title_sort Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research
author_id_str_mv 3b28bf59358fc2b9bd9a46897dbfc92d
author_id_fullname_str_mv 3b28bf59358fc2b9bd9a46897dbfc92d_***_Perumal Nithiarasu
author Perumal Nithiarasu
author2 Ahmet Erdemir
Peter J. Hunter
Gerhard A. Holzapfel
Leslie M. Loew
John Middleton
Christopher R. Jacobs
Perumal Nithiarasu
Rainlad Löhner
Guowei Wei
Beth A. Winkelstein
Victor H. Barocas
Farshid Guilak
Joy P. Ku
Jennifer L. Hicks
Scott L. Delp
Michael S. Sacks
Jeffrey A. Weiss
Gerard A. Ateshian
Steve A. Maas
Andrew D. McCulloch
Grace C. Y. Peng
format Journal article
container_title Journal of Biomechanical Engineering
container_volume 140
container_issue 2
container_start_page 024701
publishDate 2018
institution Swansea University
issn 0148-0731
doi_str_mv 10.1115/1.4038768
college_str Faculty of Science and Engineering
hierarchytype
hierarchy_top_id facultyofscienceandengineering
hierarchy_top_title Faculty of Science and Engineering
hierarchy_parent_id facultyofscienceandengineering
hierarchy_parent_title Faculty of Science and Engineering
department_str School of Aerospace, Civil, Electrical, General and Mechanical Engineering - Civil Engineering{{{_:::_}}}Faculty of Science and Engineering{{{_:::_}}}School of Aerospace, Civil, Electrical, General and Mechanical Engineering - Civil Engineering
document_store_str 1
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description The role of computational modeling for biomechanics will be increasingly prominent. In computational biomechanics, model sharing can facilitate assessment of reproducibility, and can provide an opportunity for repurposing and reuse, and a venue for medical training. The community's desire to investigate biological and biomechanical phenomena crossing multiple systems, scales, and physical domains, also motivates sharing of modeling resources as blending of models developed by domain experts is anticipated. The goal of this article is to understand current perspectives in the biomechanics community for the sharing of computational models and related resources. Opinions on opportunities, challenges, and pathways to model sharing, particularly as part of the scholarly publishing workflow, were sought. A synthesis of these opinion pieces indicates that the community recognizes the necessity and usefulness of model sharing. There is a strong will to facilitate model sharing and there are corresponding initiatives by the scientific journals. Outside the publishing enterprise, infrastructure to facilitate model sharing in biomechanics exists and simulation software developers are interested in accommodating the community's needs for sharing of modeling resources. Encouragement for the use of standardized markups, concerns related to quality assurance, acknowledgement of increased burden, and importance of stewardship of resources are noted. In the short-term, it is advisable that the community builds upon recent strategies and experiments with new pathways for continued demonstration of model sharing, its promotion, and its utility. Nonetheless, the need for a long term strategy to unify approaches in sharing computational models and related resources is acknowledged.
published_date 2018-02-01T03:47:38Z
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score 11.021648

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