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Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures

Gerhard Liebisch, Eoin Fahy, Junken Aoki, Edward A. Dennis, Thierry Durand, Christer S. Ejsing, Maria Fedorova, Ivo Feussner, William Griffiths Orcid Logo, Harald Köfeler, Alfred H. Merrill, Robert C. Murphy, Valerie B. O’Donnell, Olga Oskolkova, Shankar Subramaniam, Michael J. O. Wakelam, Friedrich Spener

Journal of Lipid Research, Volume: 61, Issue: 12, Pages: 1539 - 1555

Swansea University Author: William Griffiths Orcid Logo

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DOI (Published version): 10.1194/jlr.s120001025

Abstract

A comprehensive and standardized system to report lipid structures analyzed by mass spectrometry is essentialfor the communication and storage of lipidomics data. Herein, an update on both the LIPID MAPSclassification system and shorthand notation of lipid structures is presented for lipid categorie...

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Published in: Journal of Lipid Research
ISSN: 0022-2275 1539-7262
Published: American Society for Biochemistry & Molecular Biology (ASBMB) 2020
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URI: https://cronfa.swan.ac.uk/Record/cronfa55457
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spelling 2020-12-14T13:44:45.1999873 v2 55457 2020-10-19 Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures 3316b1d1b524be1831790933eed1c26e 0000-0002-4129-6616 William Griffiths William Griffiths true false 2020-10-19 BMS A comprehensive and standardized system to report lipid structures analyzed by mass spectrometry is essentialfor the communication and storage of lipidomics data. Herein, an update on both the LIPID MAPSclassification system and shorthand notation of lipid structures is presented for lipid categories Fatty Acyls(FA), Glycerolipids (GL), Glycerophospholipids (GP), Sphingolipids (SP), and Sterols (ST). With its majorchanges, i.e. annotation of ring double bond equivalents and number of oxygens, the updated shorthandnotation facilitates reporting of newly delineated oxygenated lipid species as well. For standardized reportingin lipidomics, the hierarchical architecture of shorthand notation reflects the diverse structural resolutionpowers provided by mass spectrometric assays. Moreover, shorthand notation is expanded beyond mammalianphyla to lipids from plant and yeast phyla. Finally, annotation of atoms is included for the use of stableisotope-labelled compounds in metabolic labelling experiments or as internal standards. Journal Article Journal of Lipid Research 61 12 1539 1555 American Society for Biochemistry & Molecular Biology (ASBMB) 0022-2275 1539-7262 1 12 2020 2020-12-01 10.1194/jlr.s120001025 COLLEGE NANME Biomedical Sciences COLLEGE CODE BMS Swansea University 2020-12-14T13:44:45.1999873 2020-10-19T17:52:59.2205240 Faculty of Medicine, Health and Life Sciences Swansea University Medical School - Medicine Gerhard Liebisch 1 Eoin Fahy 2 Junken Aoki 3 Edward A. Dennis 4 Thierry Durand 5 Christer S. Ejsing 6 Maria Fedorova 7 Ivo Feussner 8 William Griffiths 0000-0002-4129-6616 9 Harald Köfeler 10 Alfred H. Merrill 11 Robert C. Murphy 12 Valerie B. O’Donnell 13 Olga Oskolkova 14 Shankar Subramaniam 15 Michael J. O. Wakelam 16 Friedrich Spener 17 55457__18880__1fe804c06ee744049bf6e2866fe7ff06.pdf 55457.pdf 2020-12-14T13:39:13.6274149 Output 1272174 application/pdf Version of Record true © 2020 Liebisch et al. Released under the terms of the Creative Commons CC-BY license. true eng http://creativecommons.org/licenses/by/4.0
title Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures
spellingShingle Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures
William Griffiths
title_short Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures
title_full Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures
title_fullStr Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures
title_full_unstemmed Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures
title_sort Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures
author_id_str_mv 3316b1d1b524be1831790933eed1c26e
author_id_fullname_str_mv 3316b1d1b524be1831790933eed1c26e_***_William Griffiths
author William Griffiths
author2 Gerhard Liebisch
Eoin Fahy
Junken Aoki
Edward A. Dennis
Thierry Durand
Christer S. Ejsing
Maria Fedorova
Ivo Feussner
William Griffiths
Harald Köfeler
Alfred H. Merrill
Robert C. Murphy
Valerie B. O’Donnell
Olga Oskolkova
Shankar Subramaniam
Michael J. O. Wakelam
Friedrich Spener
format Journal article
container_title Journal of Lipid Research
container_volume 61
container_issue 12
container_start_page 1539
publishDate 2020
institution Swansea University
issn 0022-2275
1539-7262
doi_str_mv 10.1194/jlr.s120001025
publisher American Society for Biochemistry & Molecular Biology (ASBMB)
college_str Faculty of Medicine, Health and Life Sciences
hierarchytype
hierarchy_top_id facultyofmedicinehealthandlifesciences
hierarchy_top_title Faculty of Medicine, Health and Life Sciences
hierarchy_parent_id facultyofmedicinehealthandlifesciences
hierarchy_parent_title Faculty of Medicine, Health and Life Sciences
department_str Swansea University Medical School - Medicine{{{_:::_}}}Faculty of Medicine, Health and Life Sciences{{{_:::_}}}Swansea University Medical School - Medicine
document_store_str 1
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description A comprehensive and standardized system to report lipid structures analyzed by mass spectrometry is essentialfor the communication and storage of lipidomics data. Herein, an update on both the LIPID MAPSclassification system and shorthand notation of lipid structures is presented for lipid categories Fatty Acyls(FA), Glycerolipids (GL), Glycerophospholipids (GP), Sphingolipids (SP), and Sterols (ST). With its majorchanges, i.e. annotation of ring double bond equivalents and number of oxygens, the updated shorthandnotation facilitates reporting of newly delineated oxygenated lipid species as well. For standardized reportingin lipidomics, the hierarchical architecture of shorthand notation reflects the diverse structural resolutionpowers provided by mass spectrometric assays. Moreover, shorthand notation is expanded beyond mammalianphyla to lipids from plant and yeast phyla. Finally, annotation of atoms is included for the use of stableisotope-labelled compounds in metabolic labelling experiments or as internal standards.
published_date 2020-12-01T04:09:40Z
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